PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100078830121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 137aa    MW: 16205.9 Da    PI: 9.8338
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100078830121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.51.5e-221411151
                                  HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  vtfskRr g+lKKA+E+S+LCda+v +i+fs++gkl+ey++
  Ote100078830121|100078830121  1 VTFSKRRLGLLKKAHEISILCDADVGLIVFSTKGKLFEYAT 41
                                  8**************************************86 PP
2K-box76.38e-2657131175
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                                   y++++ k+++ +   s++ e+akLk+++e Lqr+qRh++G+dL+ Ls+keLq+Le+q++ slk+iR++K + +l+
  Ote100078830121|100078830121  57 YAEKQIKEVDLESPTSWTLEHAKLKARMEVLQRNQRHYIGQDLDGLSMKELQNLEHQIDVSLKHIRTRKVHTFLK 131
                                   667888888889999******************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.9E-19139IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-24174IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-16142IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.656143IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-17520IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-172041IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.30870137IPR002487Transcription factor, K-box
PfamPF014862.9E-1971131IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
VTFSKRRLGL LKKAHEISIL CDADVGLIVF STKGKLFEYA TDSCMERILE RYERYSYAEK  60
QIKEVDLESP TSWTLEHAKL KARMEVLQRN QRHYIGQDLD GLSMKELQNL EHQIDVSLKH  120
IRTRKVHTFL KFLRKIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-151671984Myocyte-specific enhancer factor 2B
1tqe_Q6e-151671984Myocyte-specific enhancer factor 2B
1tqe_R6e-151671984Myocyte-specific enhancer factor 2B
1tqe_S6e-151671984Myocyte-specific enhancer factor 2B
6c9l_A6e-151671984Myocyte-specific enhancer factor 2B
6c9l_B6e-151671984Myocyte-specific enhancer factor 2B
6c9l_C6e-151671984Myocyte-specific enhancer factor 2B
6c9l_D6e-151671984Myocyte-specific enhancer factor 2B
6c9l_E6e-151671984Myocyte-specific enhancer factor 2B
6c9l_F6e-151671984Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.11e-77truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.11e-77truncated transcription factor CAULIFLOWER A
SwissprotQ401709e-73AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-72AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5725e-78A0A2G9H572_9LAMI; MADS box transcription factor
STRINGXP_009625854.17e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]