PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100079020011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 310aa    MW: 35021.3 Da    PI: 9.4424
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100079020011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.4e-2993167374
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+ + k++i++l+ ++ +++++     
  Ote100079020011|100079020011  93 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLIDATKHEIDKLPPLPMIPSNFIhyfH 167
                                   78*************************************************************888887664332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.81294152IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2694163IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
RLGCRAYQFC HLLQNRHSSF VQPNFLHIIR FLKRDEASMT MNPSQKDVIA SNKEDEGDDK  60
KLPKTITPSS SSSRQWTPSF KNPRIVRVSH TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI  120
QLYDLQDRLG LSQPSKVIDW LIDATKHEID KLPPLPMIPS NFIHYFHQPP SILGNNNDVI  180
SPLDQPSPYV YGHSLIDSSQ LSAHNFLSKN SQFSVQEDLP YNSSYFQLDN TAPNLSFSQF  240
GGGFSSSLSS SQSYAPPFAP YIAGPSLENE QFRQMSHLQY STLHLINSPL KSFSFNASLH  300
LNGNENGKQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1999153155Putative transcription factor PCF6
5zkt_B4e-1999153155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072882.11e-65transcription factor TCP17-like
TrEMBLA0A4D8YNM63e-70A0A4D8YNM6_SALSN; Uncharacterized protein
STRINGMigut.D01635.1.p2e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499