PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100079120041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 281aa    MW: 30532.2 Da    PI: 5.6245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100079120041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06258281226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +++ C+ f+++G+Ck G+ C F H+
  Ote100079120041|100079120041 258 GQRVCK-FYESGHCKKGAFCDFLHP 281
                                   6799**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-6256280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408256281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESQGVLPSP NSAMKFAREF LEDCKDDCFS SIEDFSPTPE PRKSDAFSST SDINLTSQSS  60
APCKPNGASP VDAFDFFRRS SVNSSASSEG ETSAAVHSGD AGSEFHPPAQ HNMNQEMVGA  120
TMAPVQGSAD TVEPGWGQMQ GNINLVTVQG NVNLVLGGPT QGMANLGWGT NAGPAWANPN  180
SNRSPRSGSL PWDGQRKYGG ERFNCPRDWG YQGXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XSRPLPKGQR VCKFYESGHC KKGAFCDFLH P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552373.11e-108zinc finger CCCH domain-containing protein 44-like isoform X2
TrEMBLA0A4D8YHZ01e-114A0A4D8YHZ0_SALSN; Uncharacterized protein
STRINGMigut.H02481.1.p3e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516