PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100079250021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 690aa    MW: 76166.6 Da    PI: 6.1437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100079250021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1958113156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Ote100079250021|100079250021  58 KKRYHRHTQNQIQEMESFFKECPHPDNKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                                   688999***********************************************998 PP
2START198.82.4e-622464901206
                                   HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                         START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 
                                   ela +a++el+++a+ +e +W  ss    e +n+de++++f+++ +      ++ea+r+++vv+m++ +lve+l+d++ qW
  Ote100079250021|100079250021 246 ELAVAAMEELIRMAQTGELLWIPSSdgsgEVLNEDEYMTTFPRGIGpkplgLKSEASRETAVVIMNHINLVEILMDTN-QW 325
                                   57899**********************9999************999********************************.** PP

                                   -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTS CS
                         START  73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssv 142
                                   +  +     +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ +    +
  Ote100079250021|100079250021 326 SSVFSsivsRAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtREIYFVRYCKQHGDGTWAVVDVSLDNLRPAT----I 402
                                   **************************************************************************98....6 PP

                                   EE-EESSEEEEEEEECTCE........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHH CS
                         START 143 vRaellpSgiliepksngh........................skvtwvehvdlkgrlphwllrslvksglaegaktwvat 199
                                    +++++pSg+li++++ng+                         kvtw+ehv++++r +h ++++lv+sgla+ga++wva 
  Ote100079250021|100079250021 403 SKCRRRPSGCLIQELPNGYskvqlilsllissticdfgltrdsFKVTWIEHVEVDDRAVHTIYKPLVNSGLAFGARRWVAI 483
                                   89999*************************************88************************************* PP

                                   TXXXXXX CS
                         START 200 lqrqcek 206
                                   l+rqce+
  Ote100079250021|100079250021 484 LDRQCER 490
                                   *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-2142109IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1842115IPR009057Homeodomain-like
PROSITE profilePS5007116.63355115IPR001356Homeobox domain
SMARTSM003891.2E-1756119IPR001356Homeobox domain
CDDcd000867.60E-1858116No hitNo description
PfamPF000469.2E-1758113IPR001356Homeobox domain
PROSITE profilePS5084842.344237493IPR002913START domain
SuperFamilySSF559618.1E-33238492No hitNo description
CDDcd088751.00E-126241489No hitNo description
SMARTSM002341.9E-57246490IPR002913START domain
PfamPF018526.8E-51247490IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-4340474IPR023393START-like domain
SuperFamilySSF559613.98E-11510647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MFQPNMFESH HHLLEMGNKT PENEMDLIRD EEYESKSGTD NMEAPSGDDQ DPNDRPKKKR  60
YHRHTQNQIQ EMESFFKECP HPDNKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKSQHERHE  120
NTQLRNENEK LRAENIRYKE ALTNAACPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLSYPQLPP GTSRSLDLGV GSFGASTGLS GEIFGAADLL RSVSGPSDAD  240
KPMIIELAVA AMEELIRMAQ TGELLWIPSS DGSGEVLNED EYMTTFPRGI GPKPLGLKSE  300
ASRETAVVIM NHINLVEILM DTNQWSSVFS SIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT REIYFVRYCK QHGDGTWAVV DVSLDNLRPA TISKCRRRPS GCLIQELPNG  420
YSKVQLILSL LISSTICDFG LTRDSFKVTW IEHVEVDDRA VHTIYKPLVN SGLAFGARRW  480
VAILDRQCER LASVMANNIS AGDVGVISSP KGRKSMLKLA ERMVMSFCTG VGASTAHTWT  540
TLSGSGADDV RVMTRKSMDD PGRPPGIVLS AATSFWLPVP PKRVFDFLRD ENSRNESANS  600
SQSNMLILQE SCTDATGSYV IYAPVDIIAM NVVLSGGDPD YVALLPSVAF QILVDSVPTA  660
KLSLGSVATV NSLIKCTVER IKGAVLHDAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]