PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100080280041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GATA

Protein Properties

Length: 503aa MW: 55604.1 Da PI: 6.7865

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100080280041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50	3.9e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Ote100080280041\|100080280041 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.9E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.38E-11	4	45	No hit	No description
CDD	cd00202	4.05E-17	6	54	No hit	No description
Pfam	PF00320	6.4E-14	7	41	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.8E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MGKHGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDEIEDL 60 RFSRAKTISI KNKESQVLKR KLNSDEMVEF GAITLDHNQI LHKVFDEDTS NRSSSGSAIS 120 NSEKYTQYGV ADTSDLTSPP QPNTWDTVPS RKRTCVVRPK PSPVEALTKD LYTLWYEQQS 180 SCLSGSSEDD LLLESNKPMV SVEIGHGSVL IRHPNSVVRE EESEASSLSV DKQYSLNSRL 240 KSFHGITDET GAYSSNKADG KIKKNDIINF DIFSSHLTKD EQQELMKLLP SVDTSEAPYS 300 LNSMFGSIDF KQNLSSFQKL IAEGVFDNSF GGGSTEDCRN LKQLVLCDLA KLKWVEQHTA 360 LKDSKCKSSN KLEVVGGYNG FEIFTGANLK RSREGQHQKN TGSKVMIKSP RRILMKSSYG 420 QKEFIGKDES FMSSKSLFSI QNDNGSSSVL DTSHFEGDNS DQDLLLDVPS NASFPQAELL 480 PSSSYGALAS TSSSSVYPNL VRP

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MGKHGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDEIEDL  60
RFSRAKTISI KNKESQVLKR KLNSDEMVEF GAITLDHNQI LHKVFDEDTS NRSSSGSAIS  120
NSEKYTQYGV ADTSDLTSPP QPNTWDTVPS RKRTCVVRPK PSPVEALTKD LYTLWYEQQS  180
SCLSGSSEDD LLLESNKPMV SVEIGHGSVL IRHPNSVVRE EESEASSLSV DKQYSLNSRL  240
KSFHGITDET GAYSSNKADG KIKKNDIINF DIFSSHLTKD EQQELMKLLP SVDTSEAPYS  300
LNSMFGSIDF KQNLSSFQKL IAEGVFDNSF GGGSTEDCRN LKQLVLCDLA KLKWVEQHTA  360
LKDSKCKSSN KLEVVGGYNG FEIFTGANLK RSREGQHQKN TGSKVMIKSP RRILMKSSYG  420
QKEFIGKDES FMSSKSLFSI QNDNGSSSVL DTSHFEGDNS DQDLLLDVPS NASFPQAELL  480
PSSSYGALAS TSSSSVYPNL VRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070264.1	0.0	GATA transcription factor 26
Swissprot	Q8W4H1	1e-116	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A4D9BM10	0.0	A0A4D9BM10_SALSN; Uncharacterized protein
STRING	POPTR_0003s08080.1	0.0	(Populus trichocarpa)
STRING	XP_009772103.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2089	24	62