PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100080620021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25214.6 Da    PI: 6.2896
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100080620021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-2056108456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   + ++++eqle Le+ F+ + +++ e++ +LAk lgL+ rq+ vWFqNrRa++k
  Ote100080620021|100080620021  56 KKRLSNEQLEMLENSFQDEIKLDPERKMKLAKDLGLQPRQIAVWFQNRRARWK 108
                                   5569************************************************9 PP
2HD-ZIP_I/II122.61.9e-3955145292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kk+rls+eq+++LE+sF+ e kL+perK++la++Lglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda+++++++L++
  Ote100080620021|100080620021  55 KKKRLSNEQLEMLENSFQDEIKLDPERKMKLAKDLGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDAVSRDKQKLQQ 135
                                   9*****************999************************************************************ PP

                   HD-ZIP_I/II  83 eveeLreelk 92 
                                   ev +Lr+ lk
  Ote100080620021|100080620021 136 EVLALRAILK 145
                                   ******8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1943111IPR009057Homeodomain-like
SMARTSM003891.7E-1853114IPR001356Homeobox domain
CDDcd000866.07E-1755111No hitNo description
PROSITE profilePS5007116.61755110IPR001356Homeobox domain
PfamPF000462.3E-1756108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-2157117IPR009057Homeodomain-like
PRINTSPR000311.2E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.2E-590106IPR000047Helix-turn-helix motif
PfamPF021839.2E-8110144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMDWNGSLRM PYLSRPAETS NFSFLYNSSF DHFPVVEMKQ EAAMPSMSNF GGDPKKKRLS  60
NEQLEMLENS FQDEIKLDPE RKMKLAKDLG LQPRQIAVWF QNRRARWKGK QLERLYDALK  120
QEYDAVSRDK QKLQQEVLAL RAILKDQVGK NQASTGYTDI SGEETVESTS LRSSENQHPV  180
PAASNLHQIA ECNYPLNMEE LNNAVMMGTP YWATAMPSCP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101501.11e-100putative homeobox-leucine zipper protein ATHB-51 isoform X1
TrEMBLA0A4D9AFU61e-117A0A4D9AFU6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J00491.1.p1e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246