PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100081310011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 157aa    MW: 17446 Da    PI: 7.2128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100081310011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000112244123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C++ F++   L  H++ H
  Ote100081310011|100081310011 22 YECTFCKRGFTNAQALGGHMNIH 44
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.83E-72049No hitNo description
Gene3DG3DSA:3.30.160.603.3E-52048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00972244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5522249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDQNDSQSEK SNDDSTGVGR SYECTFCKRG FTNAQALGGH MNIHRKDKAK SKSKNKINQE  60
EASHKFYENH SNSRYAPPVP SADHDHQQAG YGGQLSYQLF LPSANPSFQT GNYLPVWKPD  120
RPDSGLSLRI GGSPPRDQGS NVKENEVDLE LRLGHDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091220.13e-59transcriptional regulator SUPERMAN
TrEMBLA0A2G9GA641e-48A0A2G9GA64_9LAMI; Uncharacterized protein
STRINGXP_009781958.18e-34(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152