PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100082030041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 233aa MW: 25477.8 Da PI: 6.9492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100082030041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.5e-16	117	163	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Ote100082030041\|100082030041 117 VHNLSEKRRRIRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 163 5***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.95E-17	107	167	No hit	No description
SuperFamily	SSF47459	1.83E-18	110	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-18	110	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.409	113	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-13	117	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-17	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSDLYGXXXX XXXESEDMSS FLQILLQNTS ASAATSDSAP VSAADGGFFS GGGAVAEPST 60 SVSFSDPSCF FAGESARTKF STRDKNLASN CEEPEAPDIP ANPIRPRSSK RSRPAEVHNL 120 SEKRRRIRIN EKLKALQNLI PNSNKTDKAS MLDEAIEYLK QLQLQVQAKT TMRARKLVQM 180 LTMRNGLSLH GAYSIEDNPV LHSEQDLFLQ SSLGATNHAP PTLMPSTPNS EMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851608.1	1e-64	PREDICTED: transcription factor SPATULA-like
TrEMBL	A0A2G9HK73	1e-83	A0A2G9HK73_9LAMI; Uncharacterized protein
STRING	Migut.C00561.1.p	4e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7543	23	28