PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100082180101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 239aa MW: 28064.6 Da PI: 5.8745

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100082180101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1e-10	1	46	36	83
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +tl+d s + W +k+ +k ++ ++t+GWkeFvkan++ gD++v + Ote100082180101\|100082180101 1 MTLRDCSRKLWHLKI--EKWGDDWYFTDGWKEFVKANNIAGGDVIVYE 46 68999********..88888899*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	9.13E-10	1	44	No hit	No description
Pfam	PF02362	7.7E-8	1	46	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-11	1	46	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-11	1	51	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.294	1	61	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.6E-11	137	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.92E-12	138	227	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.587	141	239	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTLRDCSRKL WHLKIEKWGD DWYFTDGWKE FVKANNIAGG DVIVYESPCE GLIDFRILGL 60 SDSKEGVEYL DYRNTDEKEE RLQIKAEPVE DADDVDYHPP QETKKEDAGA SVKKQKRKRN 120 RNSDFYGVEL FKSREVTQPR NPYFVTVANR TRQNELYIPI DVVRCYDLEL PETLVISDST 180 GRRFQTQRRK WKDGRVLYYG GWKAVCQVNL VEKNDRIICE FFTGETGDLE IKVSFLHAK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00569	DAP	Transfer from AT5G60130	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PGSC0003DMT400027673	4e-35	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1091	22	64