PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100082240051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 134aa MW: 15256.3 Da PI: 10.2081

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100082240051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H + + Ote100082240051\|100082240051 97 YKCEKCSKKYAVQSDWKAHSKIC 119 9******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.66E-6	84	128	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	85	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MEENVSNLTS ASGEASVSSN NNRNEISQQP VKKKRNQPGH PGHNLPWKLK QKSNKEVGRK 60 VYICPEIGCV HHDPSRALGD LTGIKKHFFR KHGEKKYKCE KCSKKYAVQS DWKAHSKICG 120 TREYRCDCGT LFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-22	93	134	3	44	Zinc finger protein JACKDAW
5b3h_F	5e-22	93	134	3	44	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925456.1	4e-67	protein indeterminate-domain 7
Refseq	XP_020702200.1	6e-68	protein indeterminate-domain 7
Swissprot	Q8H1F5	5e-63	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2I0X386	1e-66	A0A2I0X386_9ASPA; Zinc finger protein MAGPIE
STRING	XP_008782520.1	2e-66	(Phoenix dactylifera)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]