PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100082790141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 237aa MW: 25950.8 Da PI: 7.0527

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100082790141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.7	2.5e-11	4	56	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllka 48 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ + Ote100082790141\|100082790141 4 SCNGCRVLRKGCSENCSIRPCLewiknPESQAHATVFLAKFYGRAGLXXXXXX 56 6*******************************************998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.2E-7	4	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSENCS IRPCLEWIKN PESQAHATVF LAKFYGRAGL XXXXXXEPHQ 60 CRPPTLPPCL RADGEPYIRV GGADVVGQLA SLPEGCGGGA QGGNGQPDRK RXXXXXXXXX 120 XXXAKSGPPL KAFDIRHVIK EDKSAGSGDL HRAEAKRSPS HESSLSHQSE PVVESLGSAQ 180 TPEANINSES EERLEIDWID LNLSLGFQPV KRCVKSKPGE AASVEERLMI SFDDWDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	7e-50	LOB domain-containing protein 41
TrEMBL	A0A4D9C3B9	3e-49	A0A4D9C3B9_SALSN; Uncharacterized protein
STRING	Migut.L00314.1.p	2e-46	(Erythranthe guttata)