PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100083070071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 418aa    MW: 48284.2 Da    PI: 9.6066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100083070071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05175197123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C  Cg++F +++ + +H r H
  Ote100083070071|100083070071 175 YECRVCGRRFYNNEKFINHFRIH 197
                                   99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.6E-795176IPR029060PIN domain-like
SuperFamilySSF576672.8E-6173201No hitNo description
SMARTSM003550.0054175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.57175202IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-7177200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061674.36E-9214310No hitNo description
PfamPF019367.2E-8246326IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.6E-7259314IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MLFFAALSRK SKMSRYYCSI DICLLISFST VVSTKLRKMS NSAKFQSTFD KLHLYKKIRA  60
LVPSRSICRW SNFTTIANQN HDSGTSQSLE PRIADKNVAI FWDLDNKPPK SFPPYDAAIR  120
LKKAAQQFGF VKYMIAYANR HSFSYVPPAI RAQRRERKTL NELENKGIVK LAEPYECRVC  180
GRRFYNNEKF INHFRIHERE QTKRLNQIDS ARGKRRLNLV AKYAVKVEKY KNAARDILTP  240
KVGYGLADEL KRAGFWVRSV SDKPQAADIE LRNRMVDMMD QRLAECLVLV SDDSDFVEIL  300
KEARLRCLKT VVVGDVSDGV LKRTADAAFS WQEIMIGKAK TQAVSVVGKW KDRNVLQKLE  360
WTYDPERDKR MYFDEIESED SDISCFSSDE SESLLEKGNN GAWWELEAGE DVNSHEND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552334.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552335.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552336.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552337.10.0uncharacterized protein LOC105170049 isoform X2
TrEMBLA0A4D8YQM30.0A0A4D8YQM3_SALSN; Uncharacterized protein
STRINGMigut.D02420.1.p1e-173(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920