PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100084110081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 219aa    MW: 25035.4 Da    PI: 8.8403
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100084110081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.61.7e-329106198
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+snv+k+++ l+ee+r+ a++sl++eA +r++dPv G +g ++
  Ote100084110081|100084110081   9 ACASCKHQRKKCTEKCMLAPFFPVERTREFQAVHKVFGVSNVTKIITGLREEDRKVAVDSLIWEALCRQKDPVLGPFGDYR 89 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallk 98 
                                   ++ ++l+  k++ ++ +
  Ote100084110081|100084110081  90 RVCEELRLYKTQYQHFQ 106
                                   ******99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.158109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-319106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQRTNNTTAC ASCKHQRKKC TEKCMLAPFF PVERTREFQA VHKVFGVSNV TKIITGLREE  60
DRKVAVDSLI WEALCRQKDP VLGPFGDYRR VCEELRLYKT QYQHFQQVPN QVYKAAATQG  120
LMGWNNNKVM NKTSVTSSTF IGNGNSVMEF CTYDYSPNLH INQDSEKQRI ERENGSAIKP  180
IILPQQHLPN GFGQQYILAG QYNPLDTKSM ESTLWEGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1910861288LOB family transfactor Ramosa2.1
5ly0_B1e-1910861288LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098374.11e-106LOB domain-containing protein 2
SwissprotQ9LNB92e-45LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A4D8XQK51e-119A0A4D8XQK5_SALSN; Uncharacterized protein
STRINGMigut.H02160.1.p3e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827