PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100084370071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 174aa    MW: 19313.1 Da    PI: 8.5064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100084370071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116789123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C+ksF++   L  H  +H
  Ote100084370071|100084370071 67 YQCKTCSKSFPSFQALGGHRASH 89
                                  9***********99999998887 PP
2zf-C2H211.60.00087130152123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Ote100084370071|100084370071 130 HECSICGAEFGSGQALGGHMRRH 152
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-136691IPR007087Zinc finger, C2H2
SuperFamilySSF576674.47E-96689No hitNo description
SMARTSM003550.0356789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1386794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576674.47E-9125152No hitNo description
PfamPF139122.5E-13129154IPR007087Zinc finger, C2H2
SMARTSM003550.026130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349130152IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
RSKRPRLSSP SPLALTITAD LSFGVVSDLS PCNSAVDEEE QDMANCLILL AKGQSQRQTP  60
PGAEEAYQCK TCSKSFPSFQ ALGGHRASHK KPNKPTDLDE RKVLMREKQE CFTDDSTNLS  120
LQISNKIRVH ECSICGAEFG SGQALGGHMR RHRPIAXXXX XXXXXXXPVE RRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094585.16e-56zinc finger protein ZAT5-like
SwissprotQ681X42e-31ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A4D9AIX17e-59A0A4D9AIX1_SALSN; Uncharacterized protein
STRINGMigut.L01720.1.p3e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]