PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100084660001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 282aa    MW: 32074.9 Da    PI: 8.4776
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100084660001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.71.1e-14193217226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ktelC+ + +tG C+yG++C+FaHg
  Ote100084660001|100084660001 193 KTELCNKWEETGACPYGENCQFAHG 217
                                   9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-18187224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-11188223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187191219IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-8191218IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-12193217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-7225265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.939229264IPR000571Zinc finger, CCCH-type
SMARTSM003560.92229263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MPHISTAAMP NTGSMTRAES SSTSSSTTAT HSAYXXXXXX XXXXXXVEEV DALRRENESL  60
RVSNADFCRR ISLLLSRDRF LSESDRLNVS SSPNXXXXXX XXXXXXYGAT PQPLVEYNRF  120
ERRNPERVAL PKSISVRSKG YLKMMNRSGR ETNLHKTVSH QLSPPSQQRV YVPGAKEEED  180
ALEFDVYNQG MIKTELCNKW EETGACPYGE NCQFAHGIKE LRPVIRHPRY KTEVCXXXXX  240
XXXXVLAGDV CPYGHRCHFR HSLSDEERLM AAATPLRPPP PR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-18193266570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.11e-104zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D8YGB51e-110A0A4D8YGB5_SALSN; Butyrate response factor 1
STRINGMigut.H00243.1.p3e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129