PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100086800001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9301.74 Da    PI: 10.804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100086800001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.5e-27959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+i+n + rqvtfskRr g++KKA+EL +LCda++a+i+fs tgkl++yss
  Ote100086800001|100086800001  9 KKIDNLTSRQVTFSKRRRGLFKKAQELATLCDADIALIVFSDTGKLFDYSS 59
                                  68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.875161IPR002100Transcription factor, MADS-box
CDDcd002653.87E-33360No hitNo description
PRINTSPR004046.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-28365IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVRQKIQIKK IDNLTSRQVT FSKRRRGLFK KAQELATLCD ADIALIVFSD TGKLFDYSSS  60
RWVRVESTSL TREFDSTKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18165165MEF2C
5f28_B6e-18165165MEF2C
5f28_C6e-18165165MEF2C
5f28_D6e-18165165MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828389.12e-33PREDICTED: MADS-box protein SVP-like
RefseqXP_020551410.12e-33MADS-box protein SVP isoform X3
SwissprotQ9FUY67e-30JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A022PUG24e-32A0A022PUG2_ERYGU; Uncharacterized protein
TrEMBLM1D7284e-32M1D728_SOLTU; Uncharacterized protein
STRINGMigut.B00557.1.p7e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]