PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100086990021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 239aa    MW: 27286.9 Da    PI: 8.0893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100086990021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-082168146
                                  TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                  r  WT+eE + +  a  ++  +   +W ++a++++ g++ +++++ +  
  Ote100086990021|100086990021 21 RSTWTKEENKMFESALVMFEEEapdRWFKVAAMIP-GKSVYDVINQYKE 68
                                  789*****************99*************.*********9975 PP
2Myb_DNA-binding45.12.4e-14118162347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E+ +++ + +++G+g+Wk I+r +   +t+ q+ s+ qky
  Ote100086990021|100086990021 118 PWTEDEHRRFLMGLEKHGKGDWKNISRNFVVSKTPTQVASHAQKY 162
                                   8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9331973IPR017884SANT domain
SMARTSM007171.2E-72072IPR001005SANT/Myb domain
PfamPF002497.5E-72168IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-112277IPR009057Homeodomain-like
CDDcd001673.34E-62370No hitNo description
PROSITE profilePS5129419.066111167IPR017930Myb domain
SuperFamilySSF466891.44E-16112166IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-18114166IPR006447Myb domain, plants
SMARTSM007172.7E-11115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-11115162IPR009057Homeodomain-like
CDDcd001671.31E-9118162No hitNo description
PfamPF002491.3E-11118162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
METLFPSQVV SNSSGFVQEG RSTWTKEENK MFESALVMFE EEAPDRWFKV AAMIPGKSVY  60
DVINQYKELV ADVSNIEAGL VPIPGYLSST FTFELHRGFD VCRKRARVLD QERKKGVPWT  120
EDEHRRFLMG LEKHGKGDWK NISRNFVVSK TPTQVASHAQ KYYLRQLTGG KDKRRPSIHD  180
LTIHLTGKDA TTTCFLQKSD QPKNNAEVLL NWNDNHYGDL MAFDSSFGGS FFAYPCNMA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076737.11e-107transcription factor DIVARICATA-like
RefseqXP_011076738.11e-107transcription factor DIVARICATA-like
RefseqXP_011084945.11e-107transcription factor DIVARICATA-like
SwissprotQ8S9H74e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLC5I9W31e-102C5I9W3_9DIPS; DIV2B protein
STRINGVIT_13s0019g03370.t011e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]