PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100087710001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 103aa    MW: 12288.4 Da    PI: 10.3246
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100087710001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.12.6e-122292956
                                  HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56
                                  ++++LA++l+L  rqV vWFqNrRa+ k
  Ote100087710001|100087710001  2 QKQDLARELKLRPRQVEVWFQNRRARTK 29
                                  89************************98 PP
2HD-ZIP_I/II90.71.8e-291622788
                   HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
                                  ++K++lareL+l+prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l+een+rL+ke ++L+
  Ote100087710001|100087710001  1 KQKQDLARELKLRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLSEENRRLQKELKALK 62
                                  69*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.378131IPR001356Homeobox domain
CDDcd000861.03E-6132No hitNo description
PfamPF000469.3E-10229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-11238IPR009057Homeodomain-like
SuperFamilySSF466892.01E-10240IPR009057Homeodomain-like
PROSITE patternPS000270629IPR017970Homeobox, conserved site
PfamPF021832.5E-93162IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-183171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
KQKQDLAREL KLRPRQVEVW FQNRRARTKL KQTEVDYEFL KKCCETLSEE NRRLQKELKA  60
LKLAHPLYMQ LPAATLTMCP WCERIRGGAA VENKPQFLHS LHQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.12e-50homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-44HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D9ATU04e-50A0A4D9ATU0_SALSN; Homeobox-leucine zipper protein
STRINGPGSC0003DMT4000551992e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]