PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100088700021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 169aa MW: 18130.4 Da PI: 9.5169

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100088700021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	97	154	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ Ote100088700021\|100088700021 97 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALEDPSMLIVTYEGDHNHS 154 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	8.7E-13	50	93	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	6.4E-34	86	154	IPR003657	WRKY domain
PROSITE profile	PS50811	30.802	90	156	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	92	154	IPR003657	WRKY domain
SMART	SM00774	8.2E-38	95	155	IPR003657	WRKY domain
Pfam	PF03106	1.6E-27	97	153	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
ANSFTSSLTA GDAESEQPPS SPAAFQISLS HQQLSTSAGK PPLSSSSSFK RKCASSENGG 60 SGKCSGSSSR CHCSKRRVKR VVMVPAISMK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK 120 CSSVRGCPAR KHVERALEDP SMLIVTYEGD HNHSLSLAET PATIILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-22	92	155	14	76	Probable WRKY transcription factor 4
2lex_A	1e-22	92	155	14	76	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853631.1	6e-88	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	2e-59	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A2G9GAI0	8e-88	A0A2G9GAI0_9LAMI; Uncharacterized protein
STRING	Migut.H00406.1.p	2e-87	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]