PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100090070011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 466aa    MW: 52293.7 Da    PI: 6.2331
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100090070011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.71.7e-126934632373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   ++l+++c+e + s++ ++++++L+rl elasp g+p++Rl+ay+teALa r+a+ +++++++ pp++ ++  ++++  al+
  Ote100090070011|100090070011  93 ITLVVACVEQIGSRNIAAITHYLSRLGELASPFGSPVHRLIAYYTEALALRVAKLWPQIFHITPPRDLDHCVEDDNGVALR 173
                                   7899*****************************************************************999********* PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                   l+++++Pi+kf h+t+N+ +l+a+e ++rvHiiDfdi qGlQWp+L+q+LasR+++p ++RiTgvg+     k+ l etge
  Ote100090070011|100090070011 174 LLNQITPIPKFVHFTCNEILLRAFEAKDRVHIIDFDIRQGLQWPSLFQSLASRAHPPSHVRITGVGE----LKQDLIETGE 250
                                   *******************************************************************....99******** PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                                   rLa+fAe++ +pfef+  v++rled++l++L+vk+gE++aVn+v+q+h++l++ +s     +++L l++s+++++vv++eq
  Ote100090070011|100090070011 251 RLARFAEAFSLPFEFHH-VVDRLEDVRLWMLHVKEGETVAVNCVFQMHKTLHD-GSGGA-LRDFLGLIRSTNAEIVVMAEQ 328
                                   *****************.7********************************44.44444.689****************** PP

                          GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                   e+ hn++++  r++++l+yysa+fd ++++lp+es++r kvE++ +gre++n++aceg++r+erhet+ekW   +e+ GF+
  Ote100090070011|100090070011 329 ESAHNEATLDSRLVNSLKYYSAIFDLIDSSLPSESSARLKVEEM-FGREVRNIIACEGRDRVERHETFEKWLISMEQGGFR 408
                                   ********************************************.************************************ PP

                          GRAS 326 pvplsekaakqaklllrkvk.sdgyrveee......sgslvlgWkdrpLvsvSaW 373
                                      ++e++  q ++++++++ ++gyrve +      s +l l W+d+pL++vSaW
  Ote100090070011|100090070011 409 CRGVDEREILQGQMMVKMFSsNEGYRVERRgsneasSSCLSLSWSDQPLYAVSAW 463
                                   ********************9*******5555555589999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.46966437IPR005202Transcription factor GRAS
PfamPF035145.9E-12493463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAMAMRAFGF MQGXXXXXXX XCHVKGENSG SSSSSSGGGT SHSLSLGLSG NXXXXXXXXX  60
XXXXXEVAVV AAGNNNGERR NNNDREHEYT ELITLVVACV EQIGSRNIAA ITHYLSRLGE  120
LASPFGSPVH RLIAYYTEAL ALRVAKLWPQ IFHITPPRDL DHCVEDDNGV ALRLLNQITP  180
IPKFVHFTCN EILLRAFEAK DRVHIIDFDI RQGLQWPSLF QSLASRAHPP SHVRITGVGE  240
LKQDLIETGE RLARFAEAFS LPFEFHHVVD RLEDVRLWML HVKEGETVAV NCVFQMHKTL  300
HDGSGGALRD FLGLIRSTNA EIVVMAEQES AHNEATLDSR LVNSLKYYSA IFDLIDSSLP  360
SESSARLKVE EMFGREVRNI IACEGRDRVE RHETFEKWLI SMEQGGFRCR GVDEREILQG  420
QMMVKMFSSN EGYRVERRGS NEASSSCLSL SWSDQPLYAV SAWAPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-649946525379Protein SCARECROW
5b3h_D9e-649946525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072178.10.0scarecrow-like protein 28
SwissprotQ9CAN31e-173SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2G9H0900.0A0A2G9H090_9LAMI; Uncharacterized protein
TrEMBLA0A4D8Z0X50.0A0A4D8Z0X5_SALSN; Uncharacterized protein
STRINGVIT_02s0025g04000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434