PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100091090151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HB-PHD
Protein Properties Length: 758aa    MW: 85398.4 Da    PI: 4.9137
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100091090151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox406.6e-13669712952
                                   HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                      Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                   ++ +++L + F+ n+yp+++++e LAk++gLt rqV  WF N R
  Ote100091090151|100091090151 669 ESATQRLYASFNVNQYPDKAMKENLAKEVGLTVRQVAKWFDNAR 712
                                   67899*************************************99 PP
2PHD38.92e-13312367151
                                   SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                           PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                   +C+ Cg+   + +++++lCdg C++ fH+ Cl+++l ++++p g  +wlC+ C++k
  Ote100091090151|100091090151 312 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLEPPLLKKDIPPGdqSWLCPGCECK 367
                                   699***965555********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-14302370IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.1E-13309367IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.967310367IPR019787Zinc finger, PHD-finger
CDDcd155044.41E-26312364No hitNo description
SMARTSM002494.1E-8312365IPR001965Zinc finger, PHD-type
PfamPF006288.4E-11312367IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590313364IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.1E-15647712IPR009057Homeodomain-like
SuperFamilySSF466892.74E-13655722IPR009057Homeodomain-like
PROSITE profilePS5007113.102658718IPR001356Homeobox domain
SMARTSM003892.5E-11660722IPR001356Homeobox domain
CDDcd000867.39E-12661712No hitNo description
PfamPF000462.2E-10669712IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGLIEKEPAQ LESNVVEESK NFRDLDQDWK CDPLAPDNHR MDHERLATET LEKKGMNEAQ  60
NIQKKPVSAQ EKSDETKVTG LNDGGIFPNE DIKKQEPALE NVKMHLDSTH SEVAFQNGRM  120
GPEHVGIPSG TVSLTPGVGE LVPVMLEATN DSILLENDDR GSSGKQRKRK DKLKVSSSWV  180
LRSKVPKDPE PIESVNEGCS NGEKKRKVRK RKKLQKSTAD EFSRTRNHLR YLFHRIKYEQ  240
TLIDAYSAEG WRRQSLEKLK PEKELEKAKS HILRYKLKIR ALFQHIDESL AVGKLPESLF  300
DSQGEIDSED IFCAKCGSKD LTLDNDIILC DGACERGFHQ FCLEPPLLKK DIPPGDQSWL  360
CPGCECKADC IDILKDIQGT KISIVDSWEK IFPEAAAAAS GKKMDGGSGS SSDDSGDEEY  420
DPDKPDSSEK VEEDKSSSDE SSNVSAPNDL TASHNNEQYL GLPSDDSEDD DFDPSTLDND  480
NQVKEDSSSS DFTSDSEDLQ GLIEDETVPS EDPCETSSSA HPKEEPLSFN EEIPRVGRKK  540
RQSLKDELCY LMENSTKPLS GKRRVERLDY KKLNDETYGS SSDSSDEDFD ETITRKRRKN  600
DREKVEVKSL NETLITQNAH TEDGNQIEEK HFPKRTRRNH TDGHTNESSA KASSANVGAR  660
RSTNKRLPES ATQRLYASFN VNQYPDKAMK ENLAKEVGLT VRQVAKWFDN ARWSFYHRPR  720
LESASAEKQP EPQPTIALQE SNTRIEAAVL FLDRFQLP
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088187.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_011088188.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487861e-124PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A4D9BGL40.0A0A4D9BGL4_SALSN; Uncharacterized protein
STRINGMigut.B00404.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126