PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100091510011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 244aa MW: 26863.8 Da PI: 5.9742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100091510011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	181	220	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RR+ri +++ +L+el+P+ K++ +++LekA+ Y+k Lq Ote100091510011\|100091510011 181 NRRERISERLKTLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 220 8****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.903	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-8	173	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-12	181	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.93E-11	181	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-11	181	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	181	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MANESAAMAI IQASTFYDQD FANPSLIQTP SNSSPENHVY GGSPEKAAGK NFTVSNSSTV 60 SSPSXXXXXX XXXXXXGLGF QEGNSVITFK PNFAHVNGLF LTFDHTKIKP KMISEEDEYS 120 MWAGDHHHDL HYMGSMNSAA GHGPPETFSS HHAAAEQWAW LNDQVESGGQ EAANNKRPST 180 NRRERISERL KTLQELVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPVQGGKAP 240 DLSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855794.1	5e-70	PREDICTED: putative transcription factor bHLH086
TrEMBL	A0A2G9HP37	5e-67	A0A2G9HP37_9LAMI; Uncharacterized protein
STRING	Migut.H00272.1.p	6e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9986	21	26