PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092510011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 142aa    MW: 16467 Da    PI: 6.9165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092510011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000142446123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C++ F++   L  H++ H
  Ote100092510011|100092510011 24 YECVFCKRGFNTAQALGGHMNIH 46
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-42250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-62250No hitNo description
PfamPF139121.1E-52448IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8452451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MESNYHEESS EEVVDQDLGV GRSYECVFCK RGFNTAQALG GHMNIHRKDR ARNKPKQHEI  60
NIPKLSSPHQ PHLHYAIYVP TSSVSSNSTS YERDHHHREH TQTSNNRVGD WRMRLGDVES  120
DRSRGIINQD KELDLELRLG YD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872994.17e-35transcriptional regulator SUPERMAN-like
TrEMBLA0A4D8ZWN41e-35A0A4D8ZWN4_SALSN; Uncharacterized protein
STRINGPOPTR_0002s04250.12e-30(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152