PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092620101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 381aa    MW: 42319.1 Da    PI: 7.6326
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092620101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP110.78.9e-35177251277
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   C vegC+ dls ak yhr+h+vC  hsk+p+v+v+g+e+rfCqqCsrfh+ s+fD++krsCr rL++hn+rrrk++
  Ote100092620101|100092620101 177 CIVEGCNIDLSAAKVYHRKHRVCVRHSKSPKVVVDGRERRFCQQCSRFHNQSDFDDNKRSCR-RLSDHNARRRKPR 251
                                   9************************************************************8.7**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-29169238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.197174250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-33175254IPR004333Transcription factor, SBP-box
PfamPF031105.6E-26177249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSHFMEMDWN TKWDWESFAA YGSKTTENSR KLQLVDWTII DDGEIDVGSF NLSMGGGNSG  60
ASASDGGHVS SAKSLISAYD SERQTQDFRL ITYEDFSGNV NMNTELGGTK VGTSLMPEAS  120
IVSAEPLIGL KLGKRTYFEN SGVGGHVSSI SSVKPTATIT SLKRTKSQSQ NLSIPHCIVE  180
GCNIDLSAAK VYHRKHRVCV RHSKSPKVVV DGRERRFCQQ CSRFHNQSDF DDNKRSCRRL  240
SDHNARRRKP RGELIQLNST RLSSSFYVQV HPKSMGEGDD GVPDVSNPGP KGSKFRSQPE  300
YEYGCALSLL SSNSSLPIHG NVNHPMVHGI PQGLGSPPQH WLPTTPPHHP LETNANFQEF  360
QLFITPYDYE CDNYLYSNII N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-221772491184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086806.11e-116squamosa promoter-binding-like protein 12
RefseqXP_011086808.11e-116squamosa promoter-binding-like protein 12
RefseqXP_020551644.11e-116squamosa promoter-binding-like protein 12
TrEMBLA0A4D9BPD91e-124A0A4D9BPD9_SALSN; Uncharacterized protein
STRINGMigut.K00951.1.p2e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444