PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100093070051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 450aa    MW: 48301.2 Da    PI: 7.476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100093070051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.5e-135479227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  +++ C +++rtG+C yGdrC+F+H++
  Ote100093070051|100093070051 54 DEPDCIYYLRTGFCGYGDRCRFNHPR 79
                                  6899********************96 PP
2zf-CCCH18.82.8e-06100126227
                                   -S---SGGGGTS.--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                                   +++lC++++rtG    +G++Ck++H++
  Ote100093070051|100093070051 100 GEPLCQYYMRTGmXXXFGASCKYHHPK 126
                                   789**********************96 PP
3zf-CCCH32.61.3e-10147172227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++C+++ +tG+Ck+G +Ck++H++
  Ote100093070051|100093070051 147 GEKECSYYIKTGQCKFGVTCKYHHPQ 172
                                   6789********************97 PP
4zf-CCCH34.43.7e-11295321127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++++C++++rt  Ck+G++Ck++H+p
  Ote100093070051|100093070051 295 PGQPECQYYLRTRDCKFGSSCKYHHPP 321
                                   5789*********************97 PP
5zf-CCCH35.41.7e-11344367427
                                   ---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                   +lC+++a++G C++G++CkF H++
  Ote100093070051|100093070051 344 PLCSHYAQNGVCRFGPSCKFDHPM 367
                                   89********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1035280IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-65279IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-105479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-65879IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.56898127IPR000571Zinc finger, CCCH-type
SMARTSM003560.1598126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995145173IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-4145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7147172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018294322IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015294321IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084340368IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6340367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6341369IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9344367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MERYSATEAM EPAAEWPGSG RETGLEGEFE FVNAEPMWQL GLGEGPDSYP ERPDEPDCIY  60
YLRTGFCGYG DRCRFNHPRD RSAAMGAVRA TGGEYPERDG EPLCQYYMRT GMXXXFGASC  120
KYHHPKHGAG SSSPITFNIY GYPMRQGEKE CSYYIKTGQC KFGVTCKYHH PQPAGIQMPA  180
PGVGPGPLSV PTPTLFPTVQ SPSIQSSQQY GVLHGNWPVG RPTMLPGSYV PGSYGPMLWS  240
PYSAHVSPGT PQSTQPTVGA GPVYGITHLP PSSTTYTGPY LSSSSQKGHA FPDRPGQPEC  300
QYYLRTRDCK FGSSCKYHHP PEWSAQKSIV LLSPMGLPMR PAAPLCSHYA QNGVCRFGPS  360
CKFDHPMRAL SYSTSTSSLT DMPVAPYPVG STGATLAPSS SSSSDLRPEV VSGISKDALS  420
SANSSSASIG SAFSRSVPIP ESSTGGSSSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-138C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D8YIZ00.0A0A4D8YIZ0_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459