PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100093170021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26757.3 Da    PI: 8.0954
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100093170021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.9e-2611521051
                                  HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  qvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Ote100093170021|100093170021 11 QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 52
                                  9***************************************96 PP
2K-box92.38.6e-31791661198
                         K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                   ea + s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++ +l+ ++elq+ke++l+e+n
  Ote100093170021|100093170021  79 EALELSSQQEYLKLKSRYEALQRTQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQAMLDTLQELQRKEHALNEAN 159
                                   4555689************************************************************************** PP

                         K-box  92 kaLrkkl 98 
                                   ++L+++l
  Ote100093170021|100093170021 160 RSLKQRL 166
                                   ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.829154IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-22253IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-261069IPR002100Transcription factor, MADS-box
CDDcd002658.88E-341169No hitNo description
PfamPF003199.9E-221150IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-191631IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-193152IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.79282172IPR002487Transcription factor, K-box
PfamPF014868.1E-2584166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKEQLAWRHV QVTFAKRRNG LLKKAYELSV LCDAEVALII FSNRGKLYEF CSSSSMLKTL  60
ERYQKCNYGA PEPNVSTREA LELSSQQEYL KLKSRYEALQ RTQRNLLGED LGPLNSKELE  120
SLERQLDMSL KQIRSTRTQA MLDTLQELQR KEHALNEANR SLKQRLIEGS QSIHWNPNEH  180
DGVAYGRQHQ PPADHVFYHP LELEPTLQIG FHQNDPAAGP STVNNYISPW LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-45681691104Developmental protein SEPALLATA 3
4ox0_B7e-45681691104Developmental protein SEPALLATA 3
4ox0_C7e-45681691104Developmental protein SEPALLATA 3
4ox0_D7e-45681691104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086825.11e-130agamous-like MADS-box protein AGL9 homolog
SwissprotQ034891e-127AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLQ387331e-128Q38733_ANTMA; DEFH200 protein
STRINGSolyc05g015750.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]