PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100093170031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 74aa MW: 8479.07 Da PI: 9.676

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100093170031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng+lKKA+ELSvLCd ++ vii+s +gkly y+s Ote100093170031\|100093170031 9 KRIEDKSARQVTFSKRRNGLLKKAKELSVLCDLDIGVIIYSCRGKLYQYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.128	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-27	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.9E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.07E-35	2	60	No hit	No description
PRINTS	PR00404	4.7E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRRKLEIKR IEDKSARQVT FSKRRNGLLK KAKELSVLCD LDIGVIIYSC RGKLYQYCSN 60 LEHCVCGFLI AEGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-18	1	59	1	59	MEF2C
5f28_B	1e-18	1	59	1	59	MEF2C
5f28_C	1e-18	1	59	1	59	MEF2C
5f28_D	1e-18	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086821.1	3e-30	MADS-box transcription factor 7-like isoform X1
Refseq	XP_011086823.1	3e-30	MADS-box transcription factor 7-like isoform X3
Refseq	XP_020551812.1	3e-30	MADS-box transcription factor 7-like isoform X4
Swissprot	Q9ATE5	2e-24	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A4D8YAX9	2e-30	A0A4D8YAX9_SALSN; MADS-box transcription factor, plant
STRING	Migut.K00968.1.p	1e-25	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]