PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100094520011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 243aa    MW: 26459.2 Da    PI: 5.1818
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100094520011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP29.13.4e-09741174688
                           TCP  46 ktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                                    ti+WLlqqa+p+i+++tg++++           s+s++ ss++
  Ote100094520011|100094520011  74 XTIQWLLQQAEPSIIAATGSGTIXXXXXxXXXXXSNSQQGSSIS 117
                                   59******************777774444333333333333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.1E-674125IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPNHVGEIKA AEIKDFQIVS AEKEDSKKLA PKRSSNXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXTIQWLL QQAEPSIIAA TGSGTIXXXX XXXXXXXSNS QQGSSISSGL  120
HQKIEDLGAS MGGGGGRNPW PMIAAENPNY LQKMGFAGFE LPGNIGQMSF TSILSGGGQQ  180
LPGLELGLSQ DGNIGVLNPQ AFGQIYQQMT PAARVVNAHQ NXXXXXXXXX LSSKDDDSQE  240
SRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161676.15e-56hypothetical protein PHAVU_001G089100g
TrEMBLA0A4D9AC375e-65A0A4D9AC37_SALSN; Uncharacterized protein
STRINGXP_007161676.12e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201