PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100095100081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 253aa    MW: 27663.1 Da    PI: 5.4949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100095100081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13189234655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k+Lq
  Ote100095100081|100095100081 189 SIAERERRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKHLQ 234
                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15186246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-11187238No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16188247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-13189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQPPRGSGSA ELTRGDGGGL ARYQSAPATW LEALLESAEE QLLSDVVLDI PKPPPIPPSN  60
ASAADMDLEL LESAEGGASS NFLRMNSSPA EFLSLLNSSE GFFSNLGIPA NYEFMPVSVA  120
KRAREAEDMD KISPKKSSSS SSTYSKGEKG RQLQSGTGGS LDAEMDKLLE DSVMCRARAK  180
RGCATHPRSI AERERRTRIS DRIRKLQELV PNMDKQTNTA DMLDEAVAYV KHLQKEIQEL  240
TEHQKKCRCS TKD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850253.11e-102transcription factor bHLH80-like
RefseqXP_022850254.11e-102transcription factor bHLH80-like
RefseqXP_022850255.11e-102transcription factor bHLH80-like
RefseqXP_022850256.11e-102transcription factor bHLH80-like
SwissprotQ9C8P89e-69BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A4D9A3D51e-119A0A4D9A3D5_SALSN; Uncharacterized protein
STRINGMigut.N03367.1.p2e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923