PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100097530011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WOX

Protein Properties

Length: 217aa MW: 24331.9 Da PI: 10.8667

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100097530011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.2	8.7e-16	98	148	12	57
HHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 12 leeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Ote100097530011\|100097530011 98 IGMLEMLYRGgMRTPNAQQIEQITAQLvkygKIEGKNVFYWFQNHKARERQ 148 678****99************************************97 PP
2	Wus_type_Homeobox	94.1	1.2e-30	98	150	13	65
Wus_type_Homeobox 13 ikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 i +Le+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Ote100097530011\|100097530011 98 IGMLEMLYRGGMRTPNAQQIEQITAQLVKYGKIEGKNVFYWFQNHKARERQKQ 150 889************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.685	84	149	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-13	98	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.94E-7	100	155	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-4	100	148	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MQASMKVHHL ARVFEPTSPS LACKRLAPKL ASSSAGRGYH LKTFIRPQTG PTKNGSSDYP 60 KKESTHQVAY SYCLRRRRRA AGVGGXXXXX XXXXXXXIGM LEMLYRGGMR TPNAQQIEQI 120 TAQLVKYGKI EGKNVFYWFQ NHKARERQKQ KRISLRATPP SQFGAPAAAA TCLVLPAGEE 180 LDCSSQKRKS RSWGAFDQSA EEDRTLKLFP LHPEGRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074398.1	6e-61	WUSCHEL-related homeobox 4 isoform X2
Swissprot	Q6X7J9	1e-39	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2G9I8S0	2e-58	A0A2G9I8S0_9LAMI; Uncharacterized protein
STRING	EOY14402	2e-53	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]