PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100097960071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 592aa    MW: 65920.5 Da    PI: 9.2654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100097960071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11124162948
                                   HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   d+ l +av+ + g++Wk+Ia+ ++ +R++ qc +rwqk+l
  Ote100097960071|100097960071 124 DDTLRKAVTAYRGKSWKKIAEFFP-HRSEVQCLHRWQKVL 162
                                   789*********************.************986 PP
2Myb_DNA-binding643e-20168214148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEde+++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Ote100097960071|100097960071 168 KGPWTPEEDEKIIELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 214
                                   79******************************.*************97 PP
3Myb_DNA-binding49.78.5e-16220263146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +++WT eE++ l++a++  G++ W+  a+ ++ gRt++ +k++w++
  Ote100097960071|100097960071 220 KDAWTLEEELTLLNAHRINGNK-WAELAKLLP-GRTDNAIKNHWNS 263
                                   679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.09199162IPR017930Myb domain
SMARTSM007171.8E-6103164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-17107169IPR009057Homeodomain-like
CDDcd001671.46E-9107162No hitNo description
SuperFamilySSF466894.67E-10124172IPR009057Homeodomain-like
PfamPF002494.4E-9124162IPR001005SANT/Myb domain
PROSITE profilePS5129433.228163218IPR017930Myb domain
SuperFamilySSF466893.52E-31165261IPR009057Homeodomain-like
SMARTSM007173.4E-19167216IPR001005SANT/Myb domain
PfamPF002491.3E-19168214IPR001005SANT/Myb domain
CDDcd001673.07E-17170214No hitNo description
Gene3DG3DSA:1.10.10.605.7E-29170217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-21218269IPR009057Homeodomain-like
SMARTSM007171.6E-14219267IPR001005SANT/Myb domain
PROSITE profilePS5129420.548219269IPR017930Myb domain
PfamPF002495.1E-14220263IPR001005SANT/Myb domain
CDDcd001678.28E-11222265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MCRLRFKLLS LTVTCSRHAS SYNSPCFLSL NLTDFRRRRH SPIGLMADIK LDDFCLENKE  60
SAAASSSSVS ENSSSIALKS PGATSPRSVS PANRRTTGPI RRAKGGWTPE EAMFNTFKTV  120
LLQDDTLRKA VTAYRGKSWK KIAEFFPHRS EVQCLHRWQK VLNPELVKGP WTPEEDEKII  180
ELVAKYGPTK WSVIAKSLPG RIGKQCRERW HNHLNPDIKK DAWTLEEELT LLNAHRINGN  240
KWAELAKLLP GRTDNAIKNH WNSSLKKKLD FYLATGSLPP VAKNVLQNAV NRTNLAGNLI  300
LGSDKGSDPT VLASCDTADP CRVEDVKDKP DIVIVDHDVT AAYHQSESLH PEFTNCRTVP  360
SEAETAHSNA ESEFERRGVC GAVDQYRIIG ASSMQFDTSS YGTLYYEPPV IDSYDQLDSI  420
LGNTILKQSD ADISPTVSSP TPFVTPPSVN SRNLSARTPE SILKIAAKSF PNTPSILRKR  480
KLEQQPKETV LASSEHDHIN SSENTGMRND SLCANLTCGD DDDGVSSKSF NSSPPYRIRF  540
KRTSVLKSVE KQLNFAAVME QDFYDSNPKA GDPKVKKGPP ATKFVYKRQR RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-6712326913159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-6712326913159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.10.0transcription factor MYB3R-3-like isoform X2
TrEMBLA0A4D9B7Q00.0A0A4D9B7Q0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.L01945.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437