PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100098460021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 69aa MW: 7996.2 Da PI: 9.2527

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100098460021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	2	43	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++l ++++ +G g W++ ar g++Rt+k+c++rw++yl Ote100098460021\|100098460021 2 EEDLILMNYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 43 9****************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.31	1	47	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-17	1	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.01E-18	2	69	IPR009057	Homeodomain-like
CDD	cd00167	1.08E-7	2	43	No hit	No description
SMART	SM00717	8.5E-4	2	45	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-13	2	43	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	47	69	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MEEDLILMNY IANHGEGVWN SLARSAGLKR TGKSCRLRWL NYLRPDVRRG NITGEEQLLI 60 MELHAKWGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012849621.1	3e-43	PREDICTED: myb-related protein 305
Swissprot	P81391	2e-43	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A022RXN6	7e-42	A0A022RXN6_ERYGU; Uncharacterized protein
TrEMBL	A0A2G9GRP4	3e-42	A0A2G9GRP4_9LAMI; Uncharacterized protein
TrEMBL	A0A4D9ASP2	6e-42	A0A4D9ASP2_SALSN; Myb proto-oncogene protein, plant
TrEMBL	A0A4D9BKP0	6e-42	A0A4D9BKP0_SALSN; Myb proto-oncogene protein, plant
STRING	Migut.H00102.1.p	1e-42	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]