PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100099210011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 236aa    MW: 26221 Da    PI: 6.7647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100099210011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161457144
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                  +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw
  Ote100099210011|100099210011 14 KGPWTPEEDIILVSYIQEHGSGNWRAVPTNTGLLRCSKSCRLRW 57
                                  79******************************99********** PP
2Myb_DNA-binding25.72.7e-0856802348
                                  -HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                  +W++Ia++++  Rt++++k++w+++l
  Ote100099210011|100099210011 56 RWAAIASYLP-ERTDNDIKNYWNTHL 80
                                  4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-17557IPR009057Homeodomain-like
PROSITE profilePS5129417.157984IPR017930Myb domain
SuperFamilySSF466893.95E-181176IPR009057Homeodomain-like
SMARTSM007171.8E-151382IPR001005SANT/Myb domain
PfamPF002491.3E-141457IPR001005SANT/Myb domain
CDDcd001672.93E-121680No hitNo description
Gene3DG3DSA:1.10.10.601.1E-115888IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGSGNWRAV PTNTGLLRCS KSCRLRWAAI  60
ASYLPERTDN DIKNYWNTHL KKKLAKSQGG EKGNSSDSNP MSKGQWERRL QTDIHTAKQA  120
LCEALSLDKP VEPNRFPNPV QASTYASSTE NIARXXXXXX XXXXXXXXWM KKSPSEAAVS  180
SDSNSPSEGT LLSSNSESQL VSVETKMPLS LLEKWLLDDA AAQGQEGDFI DMAELF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.17e-99myb-related protein 306
SwissprotP813925e-83MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRE31e-105A0A059PRE3_SALMI; MYB-related transcription factor
STRINGMigut.I00176.1.p1e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]