PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100099940031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 161aa    MW: 17880.2 Da    PI: 8.3786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100099940031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.14.9e-46141131100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i+
  Ote100099940031|100099940031  14 PCAACKLLRRRCAEDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAIS 94 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                   +lqqq++ l+++lal+++e
  Ote100099940031|100099940031  95 SLQQQIDALQTQLALAQAE 113
                                   **************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.06913114IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKESSSRKQG AAPPCAACKL LRRRCAEDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ  60
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLALA QAEVVHMRMR  120
HYSSTSSSPE NASPSARGRR SHQQKSCYNM DMANMDDSFW P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-49101157112LOB family transfactor Ramosa2.1
5ly0_B3e-49101157112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090495.11e-97LOB domain-containing protein 4-like
SwissprotQ9SHE97e-67LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A4D9BCN82e-93A0A4D9BCN8_SALSN; Uncharacterized protein
STRINGMigut.D00564.1.p9e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669