PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100100370031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 157aa    MW: 17507.8 Da    PI: 4.482
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100100370031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.61.5e-231199391
                         NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                                  ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al  lGf +y+ ++ +
  Ote100100370031|100100370031 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALEVLGFREYIGEVYA 93
                                  6899**************************************************************************98876 PP

                         NF-YB 86 ylkkyr 91
                                    +++r
  Ote100100370031|100100370031 94 AYEQHR 99
                                  655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-389139IPR009072Histone-fold
SuperFamilySSF471131.77E-3412140IPR009072Histone-fold
PfamPF008088.4E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNREEKRTI APEHVLKALE VLGFREYIGE VYAAYEQHRL ETIDTMRTGK CSNGAEMTEE  120
EALAEQQRMF AEARARMNGG AAAPKPSDPE LQSSTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B6e-341213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096999.11e-100protein Dr1 homolog
RefseqXP_011097000.11e-100protein Dr1 homolog
SwissprotP495922e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2G9G6G61e-99A0A2G9G6G6_9LAMI; Class 2 transcription repressor NC2, beta subunit (Dr1)
STRINGMigut.D01587.1.p4e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]