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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100100700021 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 171aa MW: 19685.7 Da PI: 10.1183 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.5 | 0.00045 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C+++F ++ L H++ H
Ote100100700021|100100700021 33 FSCNFCKRRFYNSQALGGHQNAH 55
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.85E-6 | 30 | 60 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.032 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 171 aa Download sequence Send to blast |
MQTEKPEWLS LSISKNAIKX XXXXXXXXXX KIFSCNFCKR RFYNSQALGG HQNAHKRERG 60 LVRHLQMPRS LGVQPHSHIH KPQKTRDSSI GTATPPTLEE HADFMWPGSF RVDDHHQQTE 120 RHSSRPEPDM LDLNLKLXXX XXXXXXXXXX XXXFISTGSA LAATLHVFNC L |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011088194.1 | 2e-34 | zinc finger protein 4-like | ||||
| TrEMBL | A0A2I4DQI8 | 2e-32 | A0A2I4DQI8_JUGRE; zinc finger protein 4-like | ||||
| STRING | VIT_03s0091g00260.t01 | 3e-30 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3269 | 13 | 13 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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