PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100101050271
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CO-like
Protein Properties Length: 377aa    MW: 41415 Da    PI: 4.7043
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100101050271genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06534635
                      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHk 35
                                  C+ ++e++ + +C+++   lC +C  + H+
  Ote100101050271|100101050271  5 CDFCGEQRSIVYCRSDAASLCLSCDRNVHS 34
                                  **************************9995 PP
2CCT58.81.8e-20320363144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   R  a++RYkeK+k RkFeKk+rY++RKa+A+ R RvKGrFvk+ 
  Ote100101050271|100101050271 320 RSDAVMRYKEKKKIRKFEKKVRYATRKARADVRRRVKGRFVKAG 363
                                   889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.158147IPR000315B-box-type zinc finger
SMARTSM003361.7E-6447IPR000315B-box-type zinc finger
CDDcd000211.00E-6435No hitNo description
PROSITE profilePS5101715.12320362IPR010402CCT domain
PfamPF062031.9E-15320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGYLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALST RHLRTLVCER CNSQPASVRC  60
MEERICRTFS XXXXSFLLDS PSVEDSTCEQ GMCTMSISDN KARDSQGSQD KNNSKDVSLA  120
EASNQRNVDL DKEANWMESL TPLNPKLQNA DLFAGSSSSA THKVYVPREK GIAECEDADF  180
YDDFNVDKID MGIENYGELF GAALDNPDQL FDDEDIDGLF GANDMSGSDC QGAYLAEGSS  240
VGGMNMQPAC SNAASADSVI SCKTEPNLCF MRAISFSGLT GESSGGVDYQ DCGASSMLHM  300
GEPPWSLPGP ESTMPPSSSR SDAVMRYKEK KKIRKFEKKV RYATRKARAD VRRRVKGRFV  360
KAGDAYDYDP LSQSRSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.11e-170zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.11e-170zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.11e-170zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE55e-99COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A068LFB80.0A0A068LFB8_TECGR; CONSTANS-like protein 9
STRINGXP_009601056.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468