PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100102720071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 198aa    MW: 22686.2 Da    PI: 8.1272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100102720071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-0932621848
                                  HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +G g W++ ar  g++Rt+k+c++rw++yl
  Ote100102720071|100102720071 32 NHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                                  69***************************97 PP
2Myb_DNA-binding36.79.6e-1268107146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+eE++l++++++    + W++Ia++++ gRt++++k++w++
  Ote100102720071|100102720071  68 RGNITPEEQLLIIELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 107
                                   7899*********9998....5.99*******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071750264IPR001005SANT/Myb domain
PROSITE profilePS500907.5841062IPR017877Myb-like domain
PfamPF002491.1E-73162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-143169IPR009057Homeodomain-like
CDDcd001671.99E-43362No hitNo description
SuperFamilySSF466892.05E-1948115IPR009057Homeodomain-like
PROSITE profilePS5129418.82263113IPR017930Myb domain
SMARTSM007171.3E-867111IPR001005SANT/Myb domain
PfamPF002492.5E-1068107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2070113IPR009057Homeodomain-like
CDDcd001672.57E-1172107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEKKPCNSQE PEVXXXXXXX XXXXXXXXXX ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLII ELHAKWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAENVT  120
TPNLDHMNVD QPSYANPALS SCVPTENAVN QSYSTNIATS SFHGSMPNFH GHDFPNQSND  180
HNLWGMDDLW PMQLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-143311325108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097428.11e-77myb-related protein 305
SwissprotP813911e-72MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A059PSM52e-95A0A059PSM5_SALMI; MYB-related transcription factor
STRINGXP_009618404.15e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]