PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100103720001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 80aa MW: 9329.6 Da PI: 9.3915

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100103720001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	92.7	8.9e-29	37	80	116	159
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 PekrqrvPsayn+fikeeiqrika+nP+ishreafs+aakn Ote100103720001\|100103720001 37 FSAPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKN 80 568****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	3.8E-6	35	78	IPR009071	High mobility group box domain
Pfam	PF04690	3.4E-27	36	80	IPR006780	YABBY protein
Gene3D	G3DSA:1.10.30.10	8.4E-4	45	72	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MQQLARCCHN SMRPLQQPLD CEYGXXXXXX XXFPARFSAP EKRQRVPSAY NQFIKEEIQR 60 IKANNPEISH REAFSTAAKN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850080.1	4e-21	plant-specific transcription factor YABBY family protein
Refseq	NP_850081.1	4e-21	plant-specific transcription factor YABBY family protein
Swissprot	Q8GW46	3e-22	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2P5WNX6	1e-20	A0A2P5WNX6_GOSBA; Uncharacterized protein
STRING	AT2G26580.1	1e-20	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]