PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100104420031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28196.2 Da    PI: 4.4625
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100104420031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.8e-1750921254
                                  HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                                  ++ Le+ Fe ++++  e++++LAkkl+L+ rqV vWFqNrRa+
  Ote100104420031|100104420031 50 VHMLEKSFEAENKLEPERKTQLAKKLNLPPRQVAVWFQNRRAR 92
                                  678***************************************9 PP
2HD-ZIP_I/II99.62.8e-32501351192
                   HD-ZIP_I/II  11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk....tkqlEkdyeaLkraydalkeenerLekeveeL 87 
                                   v++LE+sFe+e+kLeperK++la++L+l prqvavWFqnrRAR        qlE+dy++Lk++yd+l+ + +++ ke+++L
  Ote100104420031|100104420031  50 VHMLEKSFEAENKLEPERKTQLAKKLNLPPRQVAVWFQNRRARXXxxxxXXQLERDYDQLKSSYDSLRCNYDSIVKENDKL 130
                                   79*****************************************86222257****************************** PP

                   HD-ZIP_I/II  88 reelk 92 
                                   ++el 
  Ote100104420031|100104420031 131 KSELL 135
                                   *9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000867.06E-153992No hitNo description
SMARTSM003891.6E-1244100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-164992IPR009057Homeodomain-like
SuperFamilySSF466891.75E-144992IPR009057Homeodomain-like
PfamPF000462.8E-145092IPR001356Homeobox domain
PROSITE profilePS5007115.035096IPR001356Homeobox domain
PfamPF021832.2E-15101142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MESGRIFFEP SCHNNMLFLG NGDSGFRGIS IITAHFFGSR KTDDQRGRVV HMLEKSFEAE  60
NKLEPERKTQ LAKKLNLPPR QVAVWFQNRR ARXXXXXXXX QLERDYDQLK SSYDSLRCNY  120
DSIVKENDKL KSELLSLTDK LQPKETAGEL DGKYEDAVPA DAPPRLQNTV KVEDRLSTGS  180
NGSAVVDDDG RQLLDSGDSY FPNNEYPQCM AAVDGINSEE DDGSDDGGSY FTDVFAVAEQ  240
QEPIGWCIWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849408.11e-116PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-59HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A022RXF01e-115A0A022RXF0_ERYGU; Uncharacterized protein
STRINGMigut.H00128.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]