PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100105480121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family S1Fa-like
Protein Properties Length: 85aa    MW: 9363.16 Da    PI: 10.3415
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100105480121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.52.2e-411985470
                          S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                  + vea+G+nPGlivll++gglll flvgny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqG+++PGe
  Ote100105480121|100105480121 19 KGVEAQGFNPGLIVLLIIGGLLLSFLVGNYLLYTYAQKTLPPKKKKPISKKKMKKERLKQGISAPGE 85
                                  568***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190133.0E-61885No hitNo description
PfamPF046891.5E-382285IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MGFEADGDFD VPPLFDRVKG VEAQGFNPGL IVLLIIGGLL LSFLVGNYLL YTYAQKTLPP  60
KKKKPISKKK MKKERLKQGI SAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.22e-28DNA-binding protein S1FA
RefseqXP_024026346.12e-28DNA-binding protein S1FA
SwissprotQ423378e-15S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA39e-26W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.11e-26(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249