PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100105680071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 258aa MW: 29268.8 Da PI: 6.7095

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100105680071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.6	1.4e-29	112	171	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C+++ +C+vkkkv+rsa+dp++++ tYeg+Hnh+ Ote100105680071\|100105680071 112 VKDGYQWRKYGQKVTRDNPSPRAYYKCSYSpSCSVKKKVQRSASDPSLLVATYEGHHNHH 171 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.2E-29	106	171	IPR003657	WRKY domain
PROSITE profile	PS50811	26.303	107	173	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-25	109	172	IPR003657	WRKY domain
SMART	SM00774	9.7E-33	112	172	IPR003657	WRKY domain
Pfam	PF03106	4.2E-24	113	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDTTSNLVID LNTKPMHNPT ETPQYDELVQ QLNKMKWENK RLNEILSIVC KNYHDLTKMD 60 LTEERKKRKF DELEAFGHIC CEECSPGRPR EIKSNIYRVN VRIDPSDTSL IVKDGYQWRK 120 YGQKVTRDNP SPRAYYKCSY SPSCSVKKKV QRSASDPSLL VATYEGHHNH HPSAAEMTAV 180 QPSPAIWPAE NVDPRICSRV ENGEESGIQR ILVEQMASSL TRNHSFTAAL VAAITGRILD 240 DGPEENDDSL SDSRNSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	111	170	16	74	Probable WRKY transcription factor 4
2lex_A	2e-21	111	170	16	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081961.1	2e-95	probable WRKY transcription factor 40
TrEMBL	A0A0D5Y9D3	1e-122	A0A0D5Y9D3_SALMI; WRKY protein
STRING	Migut.E01464.1.p	1e-76	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4500	22	42