PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100106560021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 124aa    MW: 14001.1 Da    PI: 4.6249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100106560021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20252356
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +++g+
  Ote100106560021|100106560021  2 YRGVRRRP-WGKFAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAFAMRGA 52
                                  9*******.**********.3433.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-34165IPR001471AP2/ERF domain
PROSITE profilePS5103223.327159IPR001471AP2/ERF domain
PfamPF008472.0E-15251IPR001471AP2/ERF domain
CDDcd000181.12E-21260No hitNo description
PRINTSPR003671.2E-11213IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23261IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-31260IPR001471AP2/ERF domain
PRINTSPR003671.2E-112541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MYRGVRRRPW GKFAAEIRDS TRNSVRVWLG TFDTAEEAAL AYDQAAFAMR GAAAITNFPA  60
EVVWESLREM GLEEGCSPVL ALKKRHSMHX XXXXXXXXXX ESDVVVLEDL GSDYLEELLS  120
LSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-292611574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077236.13e-59ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-52ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2G9GVE52e-58A0A2G9GVE5_9LAMI; Uncharacterized protein
STRINGXP_009764919.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]