PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100106580021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 143aa MW: 15704 Da PI: 8.511

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100106580021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlrr+C+++C+l+p++ p++q++++ +v k+FG+s ++++++a+ e++r+++++sl++eA+ r+ +Pv+Ga Ote100106580021\|100106580021 2 SCNGCRVLRRGCSEQCILRPCLewietPQAQANATLFVSKFFGRSDLMSFISAVAETKRPALFQSLLFEACGRTVNPVSGA 82 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelall 97 vg++++++++++q+++e++l+ Ote100106580021\|100106580021 83 VGLLSTGNWHICQAAVETVLT 103 *************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.844	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MSCNGCRVLR RGCSEQCILR PCLEWIETPQ AQANATLFVS KFFGRSDLMS FISAVAETKR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSTGN WHICQAAVET VLTGGVPRPV WIPPLGSDEG 120 LSXXXXXXXX XGIVWLLDRR IKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074366.2	1e-65	LOW QUALITY PROTEIN: LOB domain-containing protein 38-like
Swissprot	Q9FN11	7e-58	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2G9HX53	1e-64	A0A2G9HX53_9LAMI; Uncharacterized protein
STRING	XP_008393744.1	1e-62	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]