PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100107450161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 295aa    MW: 32537.5 Da    PI: 9.0548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100107450161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16220255134
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg
  Ote100107450161|100107450161 220 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKG 255
                                   *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.8424883IPR010399Tify domain
PfamPF062007.1E-85173IPR010399Tify domain
PROSITE profilePS5101710.626150193IPR010402CCT domain
PfamPF062037.3E-14150193IPR010402CCT domain
SMARTSM004015.1E-12214272IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.315214270IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-13215279No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15218261IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.57E-15219262No hitNo description
PfamPF003202.0E-14220255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPTPPRSPTT PPPPLTLPTP SXXXXXXXXX XXASHALYAA DMPPPSSADA GADQLTLSFQ  60
GEVYVFDSVS PEKLNPQLHE LLTVFALFVF VIQSEGLQLI VCRLFHLEVQ AVLLLLGGYE  120
VPNGIPTPGM TPQNHRNLGD FPGRSSQPQR AASLNRFREK RKERCFEKKI RYTVRKEVAL  180
RLMQRKKGQF TSSKSMVDEP GSSSADWNGN SVQEEQETSC RHCGISSKST PMMRRGPDGP  240
RTLCNACGLK WANKGILRDL TKVPIIMQQH PMKINNGEDT IVPPANAITT SSGDN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087962.11e-125GATA transcription factor 24-like isoform X2
SwissprotQ8GXL72e-72GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A4D8ZBG81e-126A0A4D8ZBG8_SALSN; Uncharacterized protein
STRINGMigut.B00543.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]