PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100108660061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TCP
Protein Properties Length: 273aa    MW: 30469.1 Da    PI: 9.6906
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100108660061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.81.4e-2849126366
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+++ k +i++l+ +              +
  Ote100108660061|100108660061  49 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLINATKLEIDKLPPLpnflhylhppspllP 126
                                   78**********************************************************998666665555554440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.6850108IPR017887Transcription factor TCP subgroup
PfamPF036347.4E-2650110IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTMNPNGKDL GSKKEEGGDK MTTPASSSSR QWSSTLKNPR IVRVSRNFGG KDRHSKVCTV  60
RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLINA TKLEIDKLPP LPNFLHYLHP  120
PSPLLPNNSI INPLEYPSPY ASHHHHHLLS PKERVTDGGF VAQNFFPLNT AVPNLAYNNS  180
YLFQLETAPD LSLSQFGGGF SFSDRTDQSS SQIYTCPSST SIAPAYATSL ENDHFRQINH  240
FINSPIKSSF SFNASIPSHQ NEAAKQDQHR STS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1955109155Putative transcription factor PCF6
5zkt_B1e-1955109155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854041.13e-69PREDICTED: transcription factor TCP5
TrEMBLA0A4D8YNM63e-81A0A4D8YNM6_SALSN; Uncharacterized protein
STRINGMigut.D01635.1.p1e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499