PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100109240041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 148aa    MW: 16752.9 Da    PI: 8.7237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100109240041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19756255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a++aa++ + g
  Ote100109240041|100109240041  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDAAARIMCG 56
                                  69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.39E-20663No hitNo description
PfamPF008472.5E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103220.771764IPR001471AP2/ERF domain
SMARTSM003801.6E-37770IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-21766IPR016177DNA-binding domain
PRINTSPR003672.2E-11819IPR001471AP2/ERF domain
PRINTSPR003672.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDAA ARIMCGNRAR  60
TNFSYNLNDP SSNLLSATLM AKLQKCHNSS LKVAKNNTTT ELAPQIPPQN NGMIKSAEDD  120
HIEQMIQELL DYSSLELSSV MDHAHSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17868667ATERF1
3gcc_A4e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022865803.14e-68ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2G9GDU25e-65A0A2G9GDU2_9LAMI; Uncharacterized protein
STRINGEOY260043e-62(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]