PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100109630021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ZF-HD
Protein Properties Length: 62aa    MW: 6756.65 Da    PI: 6.6232
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100109630021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer27.19.9e-094562320
                   ZF-HD_dimer  3 kvrYkeClkNhAaslGgh 20
                                   v+YkeC+kNhAa++Ggh
  Ote100109630021|100109630021 45 VVVYKECMKNHAAAIGGH 62
                                  589**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-54662IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152312.7634862IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MEVDLNPTPT STKDDNEIDT PPHTIKPLSF TTAAVHHHHP PPPIVVVYKE CMKNHAAAIG  60
GH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070997.13e-16zinc-finger homeodomain protein 10
TrEMBLA0A4D8YIB33e-20A0A4D8YIB3_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000802884e-11(Solanum tuberosum)