PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100110190001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 52aa    MW: 6043.73 Da    PI: 9.728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100110190001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09652347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  +WT+   + + da + + ++    W  +ar +g g++ +++k ++qk+
  Ote100110190001|100110190001  6 SWTARQNKVFEDALASYEKDkpeWWQNVARAVG-GKSVEEVKRHYQKL 52
                                  7********************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.306252IPR017884SANT domain
CDDcd001671.25E-4652No hitNo description
Gene3DG3DSA:1.10.10.601.7E-4650IPR009057Homeodomain-like
SuperFamilySSF466893.34E-10652IPR009057Homeodomain-like
PfamPF002492.9E-6652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MSSSSSWTAR QNKVFEDALA SYEKDKPEWW QNVARAVGGK SVEEVKRHYQ KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-15252656RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364991.13e-23protein RADIALIS-like 3
RefseqXP_009365559.13e-23PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-19RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9HCK48e-25A0A2G9HCK4_9LAMI; Uncharacterized protein
STRINGXP_009365559.11e-22(Pyrus x bretschneideri)
STRINGXP_008364991.11e-22(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231