PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100110840001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 211aa MW: 23567 Da PI: 8.7358

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100110840001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.5e-42	47	147	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i+ Ote100110840001\|100110840001 47 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAIS 127 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 +lqqq++ l+ael+++++e+ Ote100110840001\|100110840001 128 ALQQQVQVLQAELNAVRNEI 147 *************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.917	46	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-42	47	144	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSTERERFEE IGKKIKREVD AAAVPHQQMG GRRHVLGAAG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPHKFASVH KVFGASNVSK MLMEVPETQR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQVQVLQAEL NAVRNEILKY KFKESTMLPS SHISLLSSXX XXXXXXXXXX 180 XXXXXXXXXX XXISTAADFT TISNENISYL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	38	161	2	125	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	38	161	2	125	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617781.1	1e-104	LOB domain-containing protein 15
Swissprot	Q8L5T5	7e-86	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2C9VL82	1e-103	A0A2C9VL82_MANES; Uncharacterized protein
STRING	cassava4.1_031813m	1e-104	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]